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  • www.altanalyze.org
AltAnalyze is an easy-to-use application for the end-to-end analysis of single-cell (ICGS/ cellHarmony) and bulk RNA-Seq data. For splicing sensitive platforms (single cell/bulk RNA-Seq or microarrays), AltAnalyze identities alternative splicing..
Relevance: 66.736984
  • immunogenomics.io
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This site provides a view of some of the data from the Accelerating Medicines Partnership (AMP) Rheumatoid Arthritis (RA) Phase I project. Here, you can view single-cell RNA-seq, bulk RNA-seq, and mass cytometry data...
Relevance: 52.299618
  • acidgenomics.com
Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment...
Relevance: 45.116745
  • bustools.github.io
BUS format is a file format for single-cell RNA-seq data designed to facilitate the development of modular workflows for data processing. It consists of a binary representation of barcode and UMI sequences from scRNA-seq reads, along with sets of..
Relevance: 43.423306
  • cytotrace.stanford.edu
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CytoTRACE (Cellular (Cyto) Trajectory Reconstruction Analysis using gene Counts and Expression) is a computational method that predicts the differentiation state of cells from single-cell RNA-sequencing data. CytoTRACE leverages a simple, yet robust,..
Relevance: 42.897266
  • zji90.github.io
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My primary research interest is developing novel statistical and computational methods for integrating and analyzing big and complex genomic data, especially data from single-cell sequencing and spatial transcriptomics. Some examples include the..
Relevance: 42.79846
  • morlscrnaseq.org
These datasets are actively maintained and updated to include additional cells, time points, and treatment conditions. The current dataset contains 140 murine single-cell samples from three cochlear cell types: Inner Hair Cells (n=35), Outer Hair..
Relevance: 41.919685
  • redcliffegenetics.com
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Redcliffe envisions creation of an integrated platform of leading researchers, scientists, doctors, and leading hospitals to ensure that we serve humankind in a holistic manner in the healthcare sector.Redcliffe's mission is to bring a revolution in..
Relevance: 41.381714
  • genomicscolab.ucsf.edu
We are excited to announce we now support multiple spatial transcriptomics approaches, including the 10x Genomics Visium and Xenium platforms... We provide collaborative resources to assist UCSF researchers in carrying out projects utilizing..
Relevance: 41.20171
  • www.cengen.org
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Our results from single-cell RNA-Seq are officially out in Cell (DOI: 10.1016/j.cell.2021.06.023). The data can be explored online with the updated CeNGEN app... We made some updates to the single-cell web app. It is available at the previous URL...
Relevance: 40.27945
  • samuelbunga.github.io
  • 1
Hi! I'm a Bioinformatics Software Developer at Harvard Medical School. I am working on supporting the DARPA Panacea project which aims in developing new therapeutic drugs to block pain and inflammation using novel pharmacological platforms. My..
Relevance: 39.038837
  • mccarrolllab.org
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Drop-seq is a technology we developed to enable biologists to analyze RNA expression genome-wide in thousands of individual cells at once. We first described this in a 2015 paper in Cell. Though commercial implementations of droplet-based single-cell..
Relevance: 38.93045
  • www.easi-genomics.eu
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EASI-Genomics consortium is coordinated by Ivo Gut (CNAG-CRG), assisted by the Project Management Team. Day-to-day follow-up and operational decisions are the tasks of the Steering Group (work-package leaders) while decisions on major changes need..
Relevance: 37.769287
  • www.junbingao.com
  • 2
During his master's degree, he did an internship at Microsoft Research Asia for six months, his main research direction was object detection (2D & 3D) and deep learning. Currently, his main interest lies in AI for genomics, particularly in the areas..
Relevance: 37.027466
  • omnideconv.org
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The goal of omnideconv is to unify second generation cell-type deconvolution methods in an R package... The minimal installation installs only the dependencies required for the basic functionalities. All deconvolution methods need to be installed..
Relevance: 36.80254
  • eleanorahowe.com
I am a computational biologist and data scientist with nearly two decades of experience using genomic data to inform drug discovery, target identification, target validation, and model selection... I've worked on a wide range of diseases including..
Relevance: 35.602
  • ugant.com
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A disruptive game-change technology for preparing RNA sample within an ultimate extreme short time, 2 to 3 seconds,... Used to make cell lysates which contain all cytoplasmic RNA (acRNA), ready in seconds for directly running downstream Real-Time..
Relevance: 35.289143
  • www.hitncrbc.com
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SCancerRNA documents 9,880 entries of non-coding RNA biomarkers for human cancers by manually curating 7,785 published literature, corresponding to 9,306 lncRNAs, 250 miRNAs, 47 piRNAs, 54 snoRNAs and 223 circRNAs. To facilitate the application of..
Relevance: 34.725296
  • www.oculargeneexpression.com
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Our goal is to provide access to our well-curated set of expression data from human ocular tissues for both educational and research use. Over the past decades, we have been performing experiments to elucidate the biology of vision, and the..
Relevance: 34.546642
  • deeptiv.com
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Analyzing a single-cell RNA-seq dataset, with the goal of unveiling hierarchical structure and discovering important genes... Worked on a mini project and a dissertation to predict click through rate of a given offer, using python and linear..
Relevance: 33.683907
  • ascidian-tx.com
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Ascidian Therapeutics is a biotechnology company developing exon-editing RNA therapeutics to target the underlying causes of disease... By harnessing the RNA splicing machinery of a cell and combining it with large-scale DNA and RNA synthesis, deep-..
Relevance: 33.526184
  • fgrc.caltech.edu
The Functional Genomics Resource Center develops and disseminates experimental and computational methods for functional genomics. These include RNA transcript expression (RNA-seq) from traditional samples, small pools of cells and single cells,..
Relevance: 33.414642
  • 2046.bio
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The bioinformatics company with a vision to make bioinformatics easy to use and scale. We also have standard pipelines for NGS, RNA seq and Single Cell Analysis ready to use. Please reach out to us for more details... To make advanced bioinformatics..
Relevance: 33.051506
  • rnatransfection.com
RNA, or ribonucleic acid, is a nucleic acid composed of ribonucleotides, which are nucleotides containing ribose sugars. RNA is found in all living cells and is essential for the proper functioning of the cell. RNA is involved in a variety of..
Relevance: 33.022987
  • zhenglab.ucr.edu
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We aim to determine RNA coding of phenotypic variability and cell-specific attributes, e.g., what makes neurons so different from any other cell types. We study how the RNA codes and cell-specific attributes are altered in neurological diseases..
Relevance: 32.89251
  • www.proteinatlas.org
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This section of the Human Protein Atlas focuses on the expression profiles in human tissues of genes both on the mRNA and protein level. The protein expression data from 44 normal human tissue types is derived from antibody-based protein profiling..
Relevance: 32.453945
  • r-loop.org
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An R-loop is a three-stranded nucleic acid structure, formed during transcription, which comprises of nascent RNA hybridized with the DNA template, leaving the non-template DNA single-stranded. more... (see Figure on right panel)... R-loop is often..
Relevance: 31.540667
  • pughlab.org
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The Pugh lab is focused on the application of genome sequencing analysis as a routine clinical test and creating a bridge from bench to bedside. We are currently focused on understanding clinical implications of clonal shifts in cancer and non-..
Relevance: 31.329515
  • smithlabresearch.org
RNA-binding proteins function to regulate all aspects of RNA processing, from splicing and transport to translation and degradation. Our interest lies in deciphering how various RNA-binding proteins recognize their target RNAs. Technologies like..
Relevance: 31.24351
  • www.fdaseqc.org
We are happy to post here the results, methods, data, scripts, and phalanx of papers for the Food and Drug Administration's (FDA) Sequencing Quality Control (SEQC) Study on RNA-Sequencing (RNA-Seq) and the Association of Biomolecular Resource..
Relevance: 30.63928